The Computational Biology Core within the Institute for Systems Genomics is pleased to announce following workshops!
Workshop description and registration link can be found here: https://bioinformatics.uconn.edu/cbc-workshops/
Workshop: Virtual HPC Introduction
Dates: October 4, 2021 (1 day)
Time: 8.30am - 12.00pm
Location: Online
Cost: $50
For anyone who is new to Linux programming and "High Performance Computing (HPC)" with keen interest in using Xanadu computational resources in their analysis. This workshop is aimed to train new and existing novice users. The workshop will start with hands on training of Linux and then the participants will be introduced with HPC concepts and will be trained to run interactive sessions, job submission (Batch and Array), job monitoring Running R and python sessions etc.
Workshop: Virtual RNA-Seq (Non-model)
Dates: October 4-7 (4 days)
Time: 9.00am - 12.00pm
Location: Online
Cost: $350 (UConn affiliates including UConn Health)
$483 (External Participants)
For anyone with keen interest and desire to develop RNA-Seq analytic skills.
Day 1: Introduction to Linux, HPC, HTS, and RNA-Seq experimental design
Day 2-4 : Introduction to HTS and RNA-Seq. Data Analysis: Raw reads(fastq), readQC, Transcriptome assembly, Filtering contigs and clustering, EnTAP annotation, Transcript Quantification:Kallisto Indexing and feature quantification, Introduction to R, DE analysis and visualization (DESeq2) GoAnalysis, Q&A
This workshop is not pre-recorded and at least two instructors are available to assist users as we walk through the tutorials.
Workshop: Virtual HPC Introduction
Dates: November 1, 2021 (1 day)
Time: 8.30am - 12.00pm
Location: Online
Cost: $50
For anyone who is new to Linux programming and "High Performance Computing (HPC)" with keen interest in using Xanadu computational resources in their analysis. This workshop is aimed to train new and existing novice users. The workshop will start with hands on training of Linux and then the participants will be introduced with HPC concepts and will be trained to run interactive sessions, job submission (Batch and Array), job monitoring Running R and python sessions etc.
Workshop: Virtual Genome Assembly
Dates: November 1-4 (4 days)
Time: 9.00am - 12.00pm
Location: Online
Cost: $350 (UConn affiliates including UConn Health)
$483 (External Participants)
For anyone with keen interest in Genome Assembly methods.
Day 1: Introduction to Linux, HPC, HTS
Day 2-4 : Introduction to k-mer plots, high throughput sequencing, quality control of sequence data, contaminant detection, Genome assembly strategies and short-read assembly, Long-read and hybrid assembly, post-processing, assembly benchmarking
This workshop is not pre-recorded and at least two instructors are available to assist users as we walk through the tutorials.
Workshop: Virtual HPC Introduction
Dates: December 6, 2021 (1 day)
Time: 8.30am - 12.00pm
Location: Online
Cost: $50
For anyone who is new to Linux programming and "High Performance Computing (HPC)" with keen interest in using Xanadu computational resources in their analysis. This workshop is aimed to train new and existing novice users. The workshop will start with hands on training of Linux and then the participants will be introduced with HPC concepts and will be trained to run interactive sessions, job submission (Batch and Array), job monitoring Running R and python sessions etc.
Workshop: Virtual Variant Detection
Dates: December 6-9 (4 days)
Time: 9.00am - 12.00pm
Location: Online
Cost: $350 (UConn affiliates including UConn Health)
$483 (External Participants)
For anyone with keen interest and desire to develop variant detection analytic skills.
Day 1: Introduction to Linux, HPC, HTS, and RNA-Seq experimental design
Day 2-4 : Introduction, reference genome preparation, download and QC of sequence data, sequence alignment, QC and post-processing, variant detection using freebayes, GATK and bcftools, filtering and comparing variant sets, functional annotation, visualization.
This workshop is not pre-recorded and at least two instructors are available to assist users as we walk through the tutorials
Don’t forget our bi-weekly CBC Data Therapy Sessions!
Dates: September 24, 2021 (Biweekly thereafter)
Time: 10:30-11:30am
Location: Online - https://t.co/fWoVlmT74T
We welcome beginners and advanced users to generate a productive discussion! Bring your informatics questions!
For more information, contact: The CBC Team at cbcsupport@uconn.edu