This 4 day workshop (Sept. 14-17) is for anyone with keen interest and desire to develop variant detection analytic skills. Prior course participants have included faculty, post docs, grad students, advanced undergraduates, staff, and industry researchers.
To register and for full details, please visit https://bioinformatics.uconn.edu/cbc-workshops/
SCHEDULE:
Day 1: Introduction to Linux, HPC
Day 2-4 : Introduction, Reference genome prep , download data, QC and trimming of data, align and compress, Sort, mark duplicates, index, Understanding SAM files, Freebayes, GATK, Understanding VCF files, hard filters, comparing variant sets, snpEFF annotation, IGV